Projects

All workflowr projects

wflow-dogs

pcarbo

Minimal illustration of Binder for sharing a workflowr data analysis in R.

Thumbnail preview of website for workflowr project wflow-dogs.

daarem

stephenslab

A few illustrations of the daarem method.

Thumbnail preview of website for workflowr project daarem.

033_purrr_learning

ogorodriguez

A brief notebook to understand the purrr package from tidyverse. This is taken from Rebecca Barter’s website.

purrr

tidyverse

HHVtransmission

bryanmayer

Oral transmission analysis

Thumbnail preview of website for workflowr project HHVtransmission.

pathogen-modeling

pat-s

The workflowr project pathogen-modeling by pat-s

Thumbnail preview of website for workflowr project pathogen-modeling.

fibroblast-clonality

davismcc

Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.

single-cell-rna-seq

single-cell-omics

clonality

fibroblast-clonality

wflow-tornadoes

pcarbo

The workflowr project wflow-tornadoes by pcarbo

Thumbnail preview of website for workflowr project wflow-tornadoes.

phd-thesis-analysis

lazappi

Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data

phd-thesis

analysis

analysis-website

kidney

organoids

single-cell

rna-seq

single-cell-rna-seq

scrna-seq

Thumbnail preview of website for workflowr project phd-thesis-analysis.

rss-gsea

xiangzhu

Full results to accompany Zhu and Stephens (2018).

variational-inference

gwas-summary-statistics

bayesian-methods

gene-prioritization

enrichment-analysis

biological-pathways

gene-sets

Thumbnail preview of website for workflowr project rss-gsea.

combes-organoid-paper

Oshlack

Analysis code and output for the Combes kidney organoid scRNA-seq paper https://doi.org/10.1186/s13073-019-0615-0

analysis

single-cell

rna-seq

kidney

kidney-organoids