Projects

smash-paper

stephenslab

Source code & data accompanying Xing, Carbonetto & Stephens (2021).

PredictOutbredCrossVar

wolfemd

Reproducible documentation: Wolfe et al. Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices

quantitative-genomics

genomic-selection

non-additive-effects

cassava

genomic-mate-selection

genomic-variance-prediction

2020_HairPheno_manuscript

tinalasisi

Repository for the analyses in Lasisi et al. 2020 “High-throughput phenotyping methods for quantifying hair fiber morphology”

apaQTL

brimittleman

Project for apaQTL MS. The workflowr project apaQTL by brimittleman

r

python

snakemake-pipeline

genomics

Comparative_APA

brimittleman

Project for comparative APA- Start fall 2019

R4DS_study_exams

sciencificity

Solutions for “R for Data Science” built with {workflowr}

r

exercise-solutions

r4ds

Comparative_eQTL

bfairkun

Primary data: Chimp eQTLs called from heart tissue samples

vgapois

pcarbo

A simple implementation of the variational Gaussian approximation for the Poisson-normal model, with examples.

wflow-divvy

stephenslab

workflowr project for exploring the 2016 Divvy trip data.

sc-da-parkinsons

pwh124

Data and code for “Single-Cell RNA-Seq of Mouse Dopaminergic Neurons Informs Candidate Gene Selection for Sporadic Parkinson Disease” (Hook, 2018)